1. Load T1 data
Choose a structural T1. Loading only displays the scan; processing starts when you run analysis.
Lesion mapping and reporting in the browser
Map lesion overlap, connectivity effects, and atlas labels without uploading patient data.
CALMaR guides a structural T1 through brain extraction, editable lesion-mask review, MNI registration, atlas overlap, functional-connectivity mapping, and reportable tables.
Patient images, masks, voxel values, screenshots, and generated outputs stay on this computer.
Local-first workflow
- Files are read into browser memory for viewing and analysis.
- Atlas and model assets may be downloaded when a workflow needs them.
- Patient-derived files and generated results are not uploaded by the app.
How It Works
2. Review the mask
Use an automatic seed, blank manual mask, or uploaded mask, then edit and confirm before downstream analysis continues.
3. Map and report
Register to MNI, compute selected-atlas overlap, generate a connectivity map, and export CSV/NIfTI outputs locally.